HsaINT1002814 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133569408-133570507:+
Coord C1 exon
chr9:133569408-133569578
Coord A exon
chr9:133569579-133570330
Coord C2 exon
chr9:133570331-133570507
Length
752 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCCCTCTGCCCCGGCCTCAGTGC
3' ss Score
6.06
Exon sequences
Seq C1 exon
TGCAGTGGAAGCTGCGGGCAAGGCCGCACCATCAGGCACGTGTACTGCAAGACCAGCGACGGACGGGTAGTACCTGAGTCCCAGTGCCAGATGGAGACCAAGCCTCTGGCCATCCACCCCTGTGGGGACAAAAACTGTCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq A exon
GTGAGTGCCCCAGAGCCCGCGGAAGGGCCTCCTGGTATCTGGAGAGCATTTGGCCAGAGAGGAGAGCCAGATGGCTGGGACCACAGATGGGTGAAAAAGAGGAATTCATTGCAAATTATGAAGGGACAATTCCCTAAAAATTAATTTAGAATACAAAAGGCTTAAAAGGTAGGAAAACACCTTACAAGTCCCCAAATCTCAATTTTGCATGGCTCAGTGGTACGTGCAGAATTGGCATTGCCCCCAGCCTGGGCCCCCAAGTCCCTGGGACGCAGAAAGCTAGGGACAGGGGTTGTTTTGGCTGCCTGCTCCTGGCCCAGGGGCCTTTGCGACCTCTGATCGTGACCAGTGTGTCTTCCGCACCCACCTGTCATCGTCACCAACTTGCCATTTCAGACGAGTTGCTCTCCACAAATTGCTTTCAACCAGCAGCTCCCGGCAGGTCACTAAACCGGATAATCTCGAGCCAAATTGTTTTCTGCTAAATTGATTTTGGCCAAATCATCACTGGCCAGATTGTCATTAGCCAATTTGTTTCAAAACAGATGGTTATGTGCTAAATTGCTTTTGATCAAATCCATCTGGGGCCAAATGGTTATCGAACAAAGAGTTTCCAGCCAGTTTGTTATGCACTGGAGCATTCTCACCCAATTGCTATTGACCAGCCCGTTGTCACCAGAGTCGCCGTGGGCCCTGTGTGTAGGGTCCTGCTGGGCCCTGGCGCTGACCCGCTCCCTCTGCCCCGGCCTCAG
Seq C2 exon
TGCAACACCACCTGCGGGCGCGGGGTCAAGAAGCGGCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGTGGCCCCGAGTGCGGGCTCGCCAAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9)
A:
NA
C2:
PF0009014=TSP_1=PU(12.0=10.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGCTGCGGGCAAG
R:
GGGCTGGTGTACCACTTGAAG
Band lengths:
334-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains