GgaINT1005527 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6988525-6988941:+
Coord C1 exon
chr17:6988525-6988695
Coord A exon
chr17:6988696-6988764
Coord C2 exon
chr17:6988765-6988941
Length
69 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TATGGTAGGGAACCCTGCAGTGC
3' ss Score
-3.59
Exon sequences
Seq C1 exon
TGCAGCGGTGGCTGCGGGCAGGGCAGGATGATCCGGCACGTGTACTGCAAGACCAGCGATGGGCGCGTGGTGCCGGAGTCACAGTGCAACCTGGAGACAAAGCCACTGGCCATCCATCCCTGCGGGGACAAGAACTGCCCATCACACTGGTTGGCACAGGACTGGGAGCGG
Seq A exon
GTAAGGACTGGGGATGGGGCGACGCGTGGCGGTGGCAATGGAGGATGCTTATGGTAGGGAACCCTGCAG
Seq C2 exon
TGCAACACCACGTGCGGCCGGGGTGTGAAGAAGAGGATCGTGCTCTGCCTGGAGATTGTCAATGGCAAGATCAAGACCCACAGCCCCACTGACTGTGACGTGGCCAAGAAGCCTGTGGAGGAGACGACGTGCTTCGAACGGCCGTGCTTCAAGTGGTACACCACCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(15.3=15.8)
A:
NA
C2:
PF0009014=TSP_1=PD(81.4=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAACCTGGAGACAAAGC
R:
GGGCTGTGGGTCTTGATCTTG
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]