MmuINT0011525 @ mm9
Intron Retention
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:26959388-26960445:+
Coord C1 exon
chr2:26959388-26959558
Coord A exon
chr2:26959559-26960268
Coord C2 exon
chr2:26960269-26960445
Length
710 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCCTGTTTGGCCCTTCTCAGTGC
3' ss Score
7.22
Exon sequences
Seq C1 exon
TGCAGTGGGAGCTGTGGACAGGGCCGCACTATCAGGCATGTGTACTGTAAGACCAGCGATGGACGGGTAGTTCCCGAGTCTCAGTGCCAGACAGAGACAAAGCCTCTGGCTATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAAGACTGGGAAAGG
Seq A exon
GTGAGTGCCCAGGGGCCTGACTAGGGCCGATGGGGGTCTCTTGGGGGATGAGGGAGAATCTGCCTGAGTGTCAATGGCTGGTCACAATGAATAACTCATAACACACCTAGGAAGAACACTTGACTAACAATTTACTTGGAAAAAAGCCAAAAAGATAGTAAAACCATTTCCTGTCTCCTCCCTTAGGGGTGTCTGCAGGTCCTCCAGTGTCTTCTTGCTGGGCCCTGTTCTGGGAGACACAAAGCCAGAGACAGGGTGACCGGCTGCAGGCACTTTCAGTGCATGGGGCCTTGATGACCTTTTGCTATCTCAACCTTTGTCTTCCTTCTGTCTCAGCCTGTCATTGTCACCAACTTGCCATTTCGGACAATTGCTCTCAGTCAATGGTTTCCGGCAGGGCCACTATTAACTAAATAATCTTGAGCCAAATTGCTTTCTGCAGAATTGATTTTGGCCTGATCATCCTTGGGCAAATTACATTAGCCAATTTGTTTCAAAACAGATGGTTCGGGGGCCCAATTGCTTTTGATCAAATCTGGATGGGGCCAAATGGTTAATGAACAAAGAGTTTTCAGCCAATCCCCCAGCTGAGAGTGCTTAGCCTCTCACCCCGTATCACTGACCAGTCCTTGACTTCCAGAAGGGCTGTGGTCCTGGTTCTGGTTCCCTGAGCTTCTGGCTACTGACCTATCCTGTTTGGCCCTTCTCAG
Seq C2 exon
TGCAATACCACCTGTGGGCGTGGTGTGAAAAAGCGGTTAGTTCTCTGCATGGAGCTGGCCAACGGAAAGCCTCAGATCCGCAGTGGCCCTGAATGCGGGTTAGCCAGGAAGCCCCCTGAGGAGAGCACGTGCTTCGAGAGGCCTTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-Adamtsl2:NM_029981:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(14.6=10.5)
A:
NA
C2:
PF0009014=TSP_1=PD(80.5=55.9),PF0009014=TSP_1=PU(12.0=10.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGGGAGCTGTGGA
R:
CCAGGGGCTGGTGTACCA
Band lengths:
342-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: