RnoINT0013627 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5649928-5650855:+
Coord C1 exon
chr3:5649928-5650098
Coord A exon
chr3:5650099-5650678
Coord C2 exon
chr3:5650679-5650855
Length
580 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCCTGTCTGGCCTTTCTCAGTGC
3' ss Score
8.46
Exon sequences
Seq C1 exon
TGCAGTGGGAGCTGTGGACAGGGCCGCACAATCAGGCACGTGTACTGTAAGACCAGCGACGGACGGGTAGTCCCCGAGTCCCAGTGCCAGACAGAGACAAAGCCTCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAGGACTGGGAAAGG
Seq A exon
GTGAGTACCCAGGAGTTTGATTAGGGCCTTGCTCTGGATCACATAGCAGATGGGGAGGGTTGGCCTGGGTGTCAATGGCTGGTCACAAGGAAGAACTCAAGATAGTAAAACCATCCCCTGTCTCCCCACCTAGGCGAGTCTGCTGCCACTCTCAGCCCTGGGCCCTTGATGACCTTTTGTTATCATGACCTTTTGGTCTTCTGTCTCAACCTGTCATTGTCACCAACTTGCCATTTCAGACAATTGCTCTCAGTCAATGGTTTCCGGCAAGGCCACTATTAACTAAATCTTGAGCCAAATTGCTTTCTGCAGAATTGATTTTGGCCTGATCATCCCTGGGCAAATTACATTAGCCAATTTGTTTCAAAACAGATGGTTTGGGGCCCAATTGCTTTTGATCAAATCTGGATAGGACCAAACGGTTACCGAACAAAGAGTTCTCAGCCAATCCCCCAGCTGAAAGCGCTTACACGTTCTCCCAAATATCATCGACCAATTCCTGACCACCAGAAGTGCTGTGGCCCAGGTTCTGGTTCCCTGAGCTTCTGGCCGCTGACCCATCCTGTCTGGCCTTTCTCAG
Seq C2 exon
TGCAACACTACCTGTGGGCGTGGCGTGAAGAAGCGGTTAGTTCTTTGCATGGAGCTGGCCAATGGGAAGCCTCAGATGCGAAGTGGTTCTGAATGTGGGCTAGCCAGGAAGCCCCCTGAGGAAAGTACGTGCTTCGAGAGACCTTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9)
A:
NA
C2:
PF0009014=TSP_1=PU(12.0=10.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGGGAGCTGTGGA
R:
CCAGGGGCTGGTGTACCA
Band lengths:
342-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]