BtaINT0014345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104501585-104502630:+
Coord C1 exon
chr11:104501585-104501755
Coord A exon
chr11:104501756-104502453
Coord C2 exon
chr11:104502454-104502630
Length
698 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TGTCTGCCCTTTCACCCCAGTGC
3' ss Score
9.11
Exon sequences
Seq C1 exon
TGCAGCGGCAGCTGTGGGCAGGGCCGCATGATCAGACACGTGTACTGCAAGACCAGCGATGGACGGGTCGTGCCCGAGTCTCAGTGCCAGATGGAGACCAAGCCCCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq A exon
GTGAGTGCCCCCTGCCCGGCGAGCAGGGCCCCTCTGTCTGGGAGAGCGTTTAACTGGCTGAGAGCCAGGTGGCCAGAATGACAGGTTGGCTAAATGAGGAATTAATTGGACATGATGATGCCACAATCCGCCAAACACTAACTTGAAATAGAAAAAAACCAAGAAAGGTAAGAAAACCGCTTAAAACTTCCCAGATCTAAATAGTGAATGTTCTGTGAGGCGTGCACGGCCGATCCGTTTCCCACGACCCCGTGTTCCCGAGGTGGAAGCCCAGGGTTGGGAGTCCTTGGGCCATACTCACCCTTGGGCCCGGGCCCTGTGCATCCGCCTGTTCTCGTGACCTCTGGTGACCCGTCAAGGTCACCAGCTTGCCGTTTTCAGACGCATGGTTCCCAACCACATGGCTTTCAAACGCTTGGTTCAGGCAGATTGCTATCAGCTAATTCATCACCAGGCAAATGGTCACTGACCACTTTATTTCACAACAGATGGTTTTTCTGTGAAATTGTTTCTGATCAAATCTGTCTGGGGCCATGCGGTTATCGACCAGCAGGTTCCCAGCCAGCGTGTCATTGATCTTAGCTGTTACCCACTTGCCGTTGACTGAGCCGTTTTCACGGGCATGGCTGTGGGCCCCGTGTTCTGGTCTTCCTGACCTCTGGCCCCTGACCCCTAACCTGTCTGCCCTTTCACCCCAG
Seq C2 exon
TGCAACACCACCTGTGGCAGAGGCGTGAAGAAGAGGCTGGTCCTGTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGCGGCCCCGAGTGTGGCCTGGCCAAGAAGCCCCCCGAGGAGAGCACTTGCTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
A:
NA
C2:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGGCCGCATGATCA
R:
CCAGGGGCTGGTGTACCA
Band lengths:
326-1024
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development