GgaEX0005370 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6080798-6083566:+
Coord C1 exon
chr8:6080798-6080968
Coord A exon
chr8:6082618-6082794
Coord C2 exon
chr8:6083422-6083566
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTTTATGTTCTCTTTCCCAGTGT
3' ss Score
9.29
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TGCTCAGGTTCGTGTGGTGAGGGACGCATAAGCCGTTTCGTCGCCTGTCGCAACCTGGAGGGCAAGGTGATCTCTGACACGCAGTGTGACCCAGCTGCCAAGCCCCTGGCCGTCCATCCGTGTGGAGACAAGGACTGCCCTGCACACTGGGTGGAGCAGGAGTGGGACCAG
Seq A exon
TGTGATGCCAGCTGTGGACGAGGGACGAAGACCCGGGTTGTCCTGTGTGCAGGGCTGGAGAACGGGGTGTACAGGGAGTACCCTGAGAAGCGCTGCGAGGCTGGGCAGAAGCCTGAGGAGCAAGCTGCCTGCTTCATGAGGCCATGCTCAACCTGGTTCACTACCTCCTGGTCTCAG
Seq C2 exon
TGCAGCAAGACGTGCGGTGCTGGTGTGCGGCTGCGCGAGGTGAAGTGCTACCAGGGGGAAGCGCTGGCCCAGGGCTGTGACCCCGCTTCCAAACCAGAGGGCAGGCAGACCTGTCAGCTCCAGCCGTGCCCCACGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032_MULTIEX2-6/7=4-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
A:
PF0009014=TSP_1=PD(84.2=81.4),PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
ENSGALT00000006421fB569
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTGAGGGACGCATAAG
R:
GTTTGGAAGCGGGGTCACAG
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]