BtaEX6047340 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104501585-104504460:+
Coord C1 exon
chr11:104501585-104501755
Coord A exon
chr11:104502454-104502630
Coord C2 exon
chr11:104504316-104504460
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCCCTTTCACCCCAGTGC
3' ss Score
9.11
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGCAGCGGCAGCTGTGGGCAGGGCCGCATGATCAGACACGTGTACTGCAAGACCAGCGATGGACGGGTCGTGCCCGAGTCTCAGTGCCAGATGGAGACCAAGCCCCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq A exon
TGCAACACCACCTGTGGCAGAGGCGTGAAGAAGAGGCTGGTCCTGTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGCGGCCCCGAGTGTGGCCTGGCCAAGAAGCCCCCCGAGGAGAGCACTTGCTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCGGAG
Seq C2 exon
TGCACCAAGACGTGTGGGGTGGGCGTGCGGATGCGCGACGTGAAGTGCTACCAGGGCACCGACATTGTCCGGGGCTGCGACCCGCTGGTGAAGCCTGTTGGCAGACAAGCCTGCGACCTGCAGCCTTGCCCAACGGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
A:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACTGCAAGACCAGCGAT
R:
CAGGTCGCAGGCTTGTCTG
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]