DreEX0011315 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65208343-65214382:-
Coord C1 exon
chr5:65214212-65214382
Coord A exon
chr5:65212054-65212230
Coord C2 exon
chr5:65208343-65208487
Length
177 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTCTGCCTTCTAGTGC
3' ss Score
9.27
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
TGTTCAGGGATCTGTGGTCATGGAAAAACGGTGAGGCATGTGTACTGCAAAACAGCAGAGGGCCGAGTGGTACCCGAGTCTCAGTGCTCACCTGAAAACAAGCCTCTGGCTATTCACCCCTGCGGAGACAATGAATGTGCTCCACACTGGCTGGCCCAGGACTGGGAGAGG
Seq A exon
TGCAACACAACATGTGGACGGGGTGTGAAGAGAAGGACAGTGCTGTGTGTCAGCATTACAAGTGGGAAGGTCCAGATAAATGAGGATGAGGAATGTGACGCCAGCAAGAGGCCAGCGGATGAGGACACCTGCTTCGAGAGGCCTTGCTTTAAGTGGTACACAACGCCGTGGTCTGAG
Seq C2 exon
TGCACCAAGACGTGTGGTGTGGGTGTGCGCATGAGGGATGTGAAGTGTTATCAGGGACGAGAGCTTGTTCGTGGATGCGACCCTTTGACCAAACCTGTTAACAAGCAGACCTGTGCACTGCAGCCCTGCCCCACCGAACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
A:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAACGGTGAGGCATGT
R:
TTTGGTCAAAGGGTCGCATCC
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]