HsaEX6063764 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136434530-136439109:+
Coord C1 exon
chr9:136434530-136434700
Coord A exon
chr9:136435453-136435629
Coord C2 exon
chr9:136438965-136439109
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGCCCCGGCCTCAGTGC
3' ss Score
6.06
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGCAGTGGAAGCTGCGGGCAAGGCCGCACCATCAGGCACGTGTACTGCAAGACCAGCGACGGACGGGTAGTACCTGAGTCCCAGTGCCAGATGGAGACCAAGCCTCTGGCCATCCACCCCTGTGGGGACAAAAACTGTCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq A exon
TGCAACACCACCTGCGGGCGCGGGGTCAAGAAGCGGCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGTGGCCCCGAGTGCGGGCTCGCCAAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
Seq C2 exon
TGCACCAAGACCTGCGGGGTGGGCGTGAGGATGCGAGACGTCAAGTGCTACCAGGGGACCGACATCGTCCGTGGTTGCGATCCGTTGGTGAAGCCCGTTGGCAGACAGGCCTGTGATCTGCAGCCCTGCCCCACGGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
A:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACTGCAAGACCAGCGAC
R:
CTGCAGATCACAGGCCTGTCT
Band lengths:
255-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)