HsaEX6063764 @ hg38
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133569408-133573987:+
Coord C1 exon
chr9:133569408-133569578
Coord A exon
chr9:133570331-133570507
Coord C2 exon
chr9:133573843-133573987
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGCCCCGGCCTCAGTGC
3' ss Score
6.06
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGCAGTGGAAGCTGCGGGCAAGGCCGCACCATCAGGCACGTGTACTGCAAGACCAGCGACGGACGGGTAGTACCTGAGTCCCAGTGCCAGATGGAGACCAAGCCTCTGGCCATCCACCCCTGTGGGGACAAAAACTGTCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq A exon
TGCAACACCACCTGCGGGCGCGGGGTCAAGAAGCGGCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGTGGCCCCGAGTGCGGGCTCGCCAAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
Seq C2 exon
TGCACCAAGACCTGCGGGGTGGGCGTGAGGATGCGAGACGTCAAGTGCTACCAGGGGACCGACATCGTCCGTGGTTGCGATCCGTTGGTGAAGCCCGTTGGCAGACAGGCCTGTGATCTGCAGCCCTGCCCCACGGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'32-34,'32-31,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.044
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9)
A:
PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACTGCAAGACCAGCGAC
R:
CTGCAGATCACAGGCCTGTCT
Band lengths:
255-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains