GgaEX7009825 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6988525-6990052:+
Coord C1 exon
chr17:6988525-6988695
Coord A exon
chr17:6988765-6988941
Coord C2 exon
chr17:6989908-6990052
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATGGTAGGGAACCCTGCAGTGC
3' ss Score
-3.59
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCAGCGGTGGCTGCGGGCAGGGCAGGATGATCCGGCACGTGTACTGCAAGACCAGCGATGGGCGCGTGGTGCCGGAGTCACAGTGCAACCTGGAGACAAAGCCACTGGCCATCCATCCCTGCGGGGACAAGAACTGCCCATCACACTGGTTGGCACAGGACTGGGAGCGG
Seq A exon
TGCAACACCACGTGCGGCCGGGGTGTGAAGAAGAGGATCGTGCTCTGCCTGGAGATTGTCAATGGCAAGATCAAGACCCACAGCCCCACTGACTGTGACGTGGCCAAGAAGCCTGTGGAGGAGACGACGTGCTTCGAACGGCCGTGCTTCAAGTGGTACACCACCCCCTGGTCAGAG
Seq C2 exon
TGCACCAAAACCTGCGGCATCGGTGTGAGGATGCGGGATGTCAAGTGCTACCAGGGGAAGGACATCGTCCGCGGCTGCGACCCTCTGGTGAAGCCAGTGGGCAAGCAGACCTGTGACCTGCAGCCCTGCCCCACCGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'26-33,'26-32,27-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(15.3=15.8)
A:
PF0009014=TSP_1=PD(81.4=81.4),PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACTGCAAGACCAGCGAT
R:
CAGGTCACAGGTCTGCTTGC
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]