MmuEX6099828 @ mm9
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:26959388-26963059:+
Coord C1 exon
chr2:26959388-26959558
Coord A exon
chr2:26960269-26960445
Coord C2 exon
chr2:26962915-26963059
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTGGCCCTTCTCAGTGC
3' ss Score
7.22
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGCAGTGGGAGCTGTGGACAGGGCCGCACTATCAGGCATGTGTACTGTAAGACCAGCGATGGACGGGTAGTTCCCGAGTCTCAGTGCCAGACAGAGACAAAGCCTCTGGCTATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAAGACTGGGAAAGG
Seq A exon
TGCAATACCACCTGTGGGCGTGGTGTGAAAAAGCGGTTAGTTCTCTGCATGGAGCTGGCCAACGGAAAGCCTCAGATCCGCAGTGGCCCTGAATGCGGGTTAGCCAGGAAGCCCCCTGAGGAGAGCACGTGCTTCGAGAGGCCTTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
Seq C2 exon
TGCACCAAAACATGTGGGGTAGGTGTGAGGATGCGAGACGTGAAGTGTTACCAGGGAACCGACATTGTCCGTGGATGTGACCCACTGGTGAAGCCTGTTGGCCGACAGGCTTGTGACTTGCAGCCATGCCCCACAGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(14.6=10.5)
A:
PF0009014=TSP_1=PD(80.5=55.9),PF0009014=TSP_1=PU(12.0=10.2)
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAGACCAGCGATGGACG
R:
CTGCAAGTCACAAGCCTGTCG
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: