GgaALTA0001991-1/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6079703-6080968:+
Coord C1 exon
chr8:6079703-6079858
Coord A exon
NA
Coord C2 exon
chr8:6080805-6080968
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTATTCCTCCAAGTGCTCAGGTT
3' ss Score
0.3
Exon sequences
Seq C1 exon
TGCTCGGCCCGATGTGGCACCCAGGGGACGATGAAGAGGGAGGTGCGCTGCTCGGTGGAGGCAGCCCTCTGCGATGAGTCCCAGAAGCCCAGCAGTGAGAAGGACTGCACAGGACCGCCCTGCGACCGCCGCTGGACCGCCTCAGACTGGGGCCCG
Seq A exon
NA
Seq C2 exon
GTTCGTGTGGTGAGGGACGCATAAGCCGTTTCGTCGCCTGTCGCAACCTGGAGGGCAAGGTGATCTCTGACACGCAGTGTGACCCAGCTGCCAAGCCCCTGGCCGTCCATCCGTGTGGAGACAAGGACTGCCCTGCACACTGGGTGGAGCAGGAGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-23-27,23-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
A:
NA
C2:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCCAGCAGTGAGAAG
R:
CTTATGCGTCCCTCACCACAC
Band lengths:
100-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]