GgaALTA0002208-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004424 | SEC16B
Description
protein transport protein Sec16B [Source:RefSeq peptide;Acc:NP_001026440]
Coordinates
chr8:6607658-6607923:+
Coord C1 exon
chr8:6607658-6607716
Coord A exon
NA
Coord C2 exon
chr8:6607807-6607923
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGGTCTCCAATGCCAGCAGGAA
3' ss Score
3.8
Exon sequences
Seq C1 exon
GGGATGCTGAGGAGCCCCAGGATGCCCATGGGGTGCAGCAGCCGATGCTGGCAGAGCTG
Seq A exon
NA
Seq C2 exon
GAATTAAGCACAAGGGCTCGCTCGGCCTCGGAGAGCTCCACAGCATCCCTGGAGGAAGACAGCCAGACATCTTCAGACAGCCCTGCTGAGGAGCTGGAGGGGACATCGGAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-26-37,26-36,26-35-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCCATGGGGTGCAG
R:
CTGTCTTCCTCCAGGGATGCT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]