GgaALTA0002311-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5731536-5732455:+
Coord C1 exon
chr21:5731536-5731672
Coord A exon
NA
Coord C2 exon
chr21:5732310-5732455
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCATTTCCGTTACTTCCCAGCAA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTATGACATTGCTTTGATCAAACTCACCGAACACGTTGAACTGAGTGACAAAATCAAGCTGGCCTGCCTCCCTCCTGCAGAAAGCATCCTGTCATCCAACACTGCCTGCTACGTGACGGGATGGGGAAGACTGCAGA
Seq A exon
NA
Seq C2 exon
CAAATGGAGCTCTCCCAGATGAACTGCAGCAAGGCCTGTTGCTGGTAGTAGATTATGCAACTTGTTCCAAGACCAACTGGTGGGGAAGCACGGTGAAAACCAACATGGTGTGCGCTGGTGGAGATGGAATCACCTCCAGTTGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568-4-7,4-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGAACACGTTGAACTGA
R:
GTGATTCCATCTCCACCAGCG
Band lengths:
247-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]