HsaALTA1031720-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000142615 | CELA2A
Description
chymotrypsin like elastase family member 2A [Source:HGNC Symbol;Acc:HGNC:24609]
Coordinates
chr1:15463386-15466144:+
Coord C1 exon
chr1:15463386-15463522
Coord A exon
NA
Coord C2 exon
chr1:15465999-15466144
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTCTCTCTGATCTCATTCAGCCA
3' ss Score
6.54
Exon sequences
Seq C1 exon
GAACGACATTGCCCTGCTCAAACTGGCTAACCCCGTCTCCCTCACCGACAAGATCCAGCTGGCCTGCCTCCCTCCTGCCGGCACCATTCTACCCAACAACTACCCCTGCTACGTCACGGGCTGGGGAAGGCTGCAGA
Seq A exon
NA
Seq C2 exon
CCAACGGGGCTGTTCCTGATGTCCTGCAGCAGGGCCGGTTGCTGGTTGTGGACTATGCCACCTGCTCCAGCTCTGCCTGGTGGGGCAGCAGCGTGAAAACCAGTATGATCTGTGCTGGGGGTGATGGCGTGATCTCCAGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142615-12-12,12-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTCACCGACAAGATCC
R:
GCTGCAGGACATCAGGAACAG
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains