GgaALTA0002328-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7689051-7690394:+
Coord C1 exon
chr8:7689051-7689166
Coord A exon
chr8:7690104-7690293
Coord C2 exon
chr8:7690294-7690394
Length
190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTTGTTTGTTTTCATATAGTCT
3' ss Score
7.33
Exon sequences
Seq C1 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
Seq A exon
TCTTCTGTCATCTTGATGAGATCTGAAGCGTAGCAGACAGCCTATTCGTTGTACAGGGCTTGTGTTTACACATGTTCAGAACTGCTCATTGAGGTGCTACAACAAGTATTGAAGTCCTTTCACTTAAACTTTCAAAGCTCAGTAATAACTCCTCTTCATCTCATCTCCTTTCTCCTCACAACTTTTTCAG
Seq C2 exon
CAGCGATGTTCCAAATGGATCGGCCTTGACACAAGAAAACATCAGCCTCCTGTCAAACAAGGCAGCATCTCTCAGCCTGTCGGAGGACCCGGAGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-23-28,23-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCACTAAACAGACAGAA
R:
CTCCTCCCTCCGGGTCCTC
Band lengths:
181-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]