GgaALTA0002328-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7353702-7355048:+
Coord C1 exon
chr8:7353702-7353817
Coord A exon
chr8:7354945-7354947
Coord C2 exon
chr8:7354948-7355048
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTCCTCACAACTTTTTCAGCAG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
Seq A exon
CAG
Seq C2 exon
CGATGTTCCAAATGGATCGGCCTTGACACAAGAAAACATCAGCCTCCTGTCAAACAAGGCAGCATCTCTCAGCCTGTCGGAGGACCCGGAGGGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-28-24,28-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAAGGTTCCAGCTGAGG
R:
TGCTGCCTTGTTTGACAGGAG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]