GgaEX1048709 @ galGal4
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7353702-7355098:+
Coord C1 exon
chr8:7353702-7353817
Coord A exon
chr8:7354755-7354847
Coord C2 exon
chr8:7354945-7355098
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTTTTCATATAGTCT
3' ss Score
7.33
5' ss Seq
GAGGTGCTA
5' ss Score
0.8
Exon sequences
Seq C1 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
Seq A exon
TCTTCTGTCATCTTGATGAGATCTGAAGCGTAGCAGACAGCCTATTCGTTGTACAGGGCTTGTGTTTACACATGTTCAGAACTGCTCATTGAG
Seq C2 exon
CAGCGATGTTCCAAATGGATCGGCCTTGACACAAGAAAACATCAGCCTCCTGTCAAACAAGGCAGCATCTCTCAGCCTGTCGGAGGACCCGGAGGGAGGAGGAGACAGCCAAGATTCCCAGAGGATGGGTGTTACACCCACATCTGCTCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-'28-23,'28-22,29-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007298fB11372
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAAGCAAGGTTCCAGCT
R:
TCCTCTGGGAATCTTGGCTGT
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]