GgaALTA0002341-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5914913-5915780:-
Coord C1 exon
chr17:5915660-5915780
Coord A exon
NA
Coord C2 exon
chr17:5914913-5914985
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGC
5' ss Score
7.85
3' ss Seq
CTTGCTTTATTGCCAGCCAGTTT
3' ss Score
1.08
Exon sequences
Seq C1 exon
GTGTTCAGCCGAGGGGAGCTGGAGCTCATTGCAGACCTGTGCGTGAAGCACGACGCCCTTTGCATCAGCGATGAAGTGTACGAGTGGCTGGTGTACGACGGCAAGCAGCACATCCGCATCG
Seq A exon
NA
Seq C2 exon
TTTGCCAGGGATGTGGGACCGCACAGTGATCATTGGGAGTGCTGGAAAAACCTTCAGTGTCACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-11-9,11-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAAGTGTACGAGTGGC
R:
ACTCCCAATGATCACTGTGCG
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]