GgaALTA0002341-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5914913-5915780:-
Coord C1 exon
chr17:5915660-5915780
Coord A exon
chr17:5914986-5914989
Coord C2 exon
chr17:5914913-5914985
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGC
5' ss Score
7.85
3' ss Seq
TTCTCTTGCTTTATTGCCAGCCA
3' ss Score
5.28
Exon sequences
Seq C1 exon
GTGTTCAGCCGAGGGGAGCTGGAGCTCATTGCAGACCTGTGCGTGAAGCACGACGCCCTTTGCATCAGCGATGAAGTGTACGAGTGGCTGGTGTACGACGGCAAGCAGCACATCCGCATCG
Seq A exon
CCAG
Seq C2 exon
TTTGCCAGGGATGTGGGACCGCACAGTGATCATTGGGAGTGCTGGAAAAACCTTCAGTGTCACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-11-9,11-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAAGTGTACGAGTGGC
R:
ACTCCCAATGATCACTGTGCG
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]