BtaALTA0005834-2/5 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000036101 | CCBL1
Description
Bos taurus cysteine conjugate-beta lyase, cytoplasmic (CCBL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077978]
Coordinates
chr11:99342453-99342990:-
Coord C1 exon
chr11:99342870-99342990
Coord A exon
chr11:99342526-99342529
Coord C2 exon
chr11:99342453-99342525
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CTCTCTTTGATCTTGGGCAGCCA
3' ss Score
6.19
Exon sequences
Seq C1 exon
GTGTTCTCCAAGGAAGAGCTGGAGCTGGTGGCCAGCCTGTGCCAGCAGCATGACGTGGTGTGCATCTCGGACGAGGTGTACCAGTGGATGGTCTTCGATGGGTTCCAGCACATCAGCATCG
Seq A exon
CCAG
Seq C2 exon
CCTCCCTGGCATGTGGGAACGCACCCTGACTATCGGTAGCGCTGGCAAGACCTTCAGTGTCACAGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000036101-23-33,23-32,23-31,23-30,23-29-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(11.6=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCGGACGAGGTGTACCAG
R:
TACCGATAGTCAGGGTGCGTT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development