HsaALTA0001535-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128836009-128836922:-
Coord C1 exon
chr9:128836802-128836922
Coord A exon
NA
Coord C2 exon
chr9:128836009-128836073
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TTCTGTTCGGCCTTGGGCAGCCA
3' ss Score
3.94
Exon sequences
Seq C1 exon
GTGTTCTCCAGGGAAGAGCTGGAGCTGGTGGCCAGCCTTTGCCAGCAGCATGACGTGGTGTGTATCACTGATGAAGTCTACCAGTGGATGGTCTACGACGGGCACCAGCACATCAGCATTG
Seq A exon
NA
Seq C2 exon
CCAGCCTCCCTGGCATGTGGGAACGGACCCTGACCATCGGCAGCGCCGGCAAGACCTTCAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-25-42,25-41,25-40-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACGTGGTGTGTATCACT
R:
CGATGGTCAGGGTCCGTTCC
Band lengths:
113-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains