HsaALTA0001535-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128836009-128836922:-
Coord C1 exon
chr9:128836802-128836922
Coord A exon
chr9:128836074-128836105
Coord C2 exon
chr9:128836009-128836073
Length
32 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCCCGTCCCCCTCACCCCAGTCT
3' ss Score
8
Exon sequences
Seq C1 exon
GTGTTCTCCAGGGAAGAGCTGGAGCTGGTGGCCAGCCTTTGCCAGCAGCATGACGTGGTGTGTATCACTGATGAAGTCTACCAGTGGATGGTCTACGACGGGCACCAGCACATCAGCATTG
Seq A exon
TCTCAGCAGCTGTTCTGTTCGGCCTTGGGCAG
Seq C2 exon
CCAGCCTCCCTGGCATGTGGGAACGGACCCTGACCATCGGCAGCGCCGGCAAGACCTTCAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-25-42,25-41,25-40-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACGTGGTGTGTATCACT
R:
CGATGGTCAGGGTCCGTTCC
Band lengths:
113-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains