MmuALTA1031242-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039648 | Kyat1
Description
kynurenine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30186894-30187307:-
Coord C1 exon
chr2:30187187-30187307
Coord A exon
NA
Coord C2 exon
chr2:30186894-30186909
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TTCTTCTTGGCCTCGAGTAGCCA
3' ss Score
0.84
Exon sequences
Seq C1 exon
GTATTCTCTAAGAAGGAGCTGGAGCTGGTGGCTGCACTGTGCCAACAGCATGATGTCCTGTGCTTCTCTGATGAGGTCTACCAGTGGCTGGTCTATGATGGGCACCAGCACATCAGCATTG
Seq A exon
NA
Seq C2 exon
CCAGCCTCCCTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-23-27,23-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types