RnoALTA0021083-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8753964-8754461:-
Coord C1 exon
chr3:8754341-8754461
Coord A exon
chr3:8754037-8754040
Coord C2 exon
chr3:8753964-8754036
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CTCTTCTTGGCCCTGGGTAGCCA
3' ss Score
4.12
Exon sequences
Seq C1 exon
GTATTCTCTAGGATGGAGCTGGAGCTGGTGGCTAATCTGTGCCAGCAGCACGATGTCTTGTGCATCTCTGATGAGGTCTACCAGTGGCTGGTCTATGACGGGCACCAGCACGTCAGCATCG
Seq A exon
CCAG
Seq C2 exon
CCTCCCTGGCATGTGGGATCGGACCCTGACCATCGGCAGTGCAGGCAAAAGCTTCAGTGCCACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097-13-12,13-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGGTCTACCAGTGGCT
R:
CTTTTGCCTGCACTGCCGAT
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]