GgaALTA0002727-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7638432-7639918:+
Coord C1 exon
chr12:7638432-7638527
Coord A exon
chr12:7639797-7639798
Coord C2 exon
chr12:7639799-7639918
Length
2 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTTCTCTCTTCTTTCTCAAGAGA
3' ss Score
7.22
Exon sequences
Seq C1 exon
AAATTCTGACAAGGGAGTTGAAGTTGCCTTCCTTGGAACACGGACCGGATTATCTCGTATCAACCTGTTTGTGGGTCCAGAACAGCTTACTAATCA
Seq A exon
AG
Seq C2 exon
ATTTCCTGACAGCTGAAGACAAGGAAAACATTTTTAATGCTGATCATTTTCCACTCTGGTATAGAAGAGCTGCTGAGCAAATACCCGGGAGCTTTGTCTATTCAATTCCATTTAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-32-35,32-34,32-33-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCCTTCCTTGGAACACG
R:
TCCTTGTCTTCAGCTGTCAGGA
Band lengths:
100-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]