MmuALTA1009375-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29045549-29052500:-
Coord C1 exon
chr14:29052405-29052500
Coord A exon
chr14:29045605-29045670
Coord C2 exon
chr14:29045549-29045604
Length
66 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CTCTTCTCATTCATTTTCAGGGA
3' ss Score
11.64
Exon sequences
Seq C1 exon
GAATTCTGACAAGGGTGTAGAGGTCGCCTTCCTCGGCACTCGCACAGGCCTCTCAAGAATCAACCTGTTTGTGGGGGCCGAACAACTCACCAATCA
Seq A exon
GGACTTTCTGAAGGCTGGAGACAAAGAGAACATTTTTAATGCCGATCATTTCCCTCTCTGGTACAG
Seq C2 exon
AAGAGCTGCCGAGCAGATCGCAGGAAGCTTTGTCTATTCCATCCCCTTCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-50-59,50-58-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTGACAAGGGTGTAGAGGT
R:
CTGTGCTGAAGGGGATGGAAT
Band lengths:
151-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types