GgaALTA0002778-3/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005507 | Q5ZIZ5_CHICK
Description
NA
Coordinates
chr4:2266780-2269413:-
Coord C1 exon
chr4:2269278-2269413
Coord A exon
chr4:2266923-2266949
Coord C2 exon
chr4:2266780-2266922
Length
27 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATTTATCCCCCCAACTGTAGAGC
3' ss Score
6.85
Exon sequences
Seq C1 exon
GTGGGGAAGATGCAGGGCAACAAGGGCTTCAACATGGAGAAACAGAACCACGCGCCGCGGAAGCAGCACCAGCACCAACACCAGCAGCACCCGCCGCCCTCCATCCCCGCCAACGGGCAGCAGGCCAACAGCCAGA
Seq A exon
AGCAGCTGTGTACCTTATTCCCCTCAG
Seq C2 exon
ATGAAGGCCTGACCATCGACCTGAAGAATTTCCGGAAACCTGGGGAAAAAACCTTCACCCAAAGAAGCCGCCTCTTTGTGGGGAATCTGCCCCCAGATATTACAGAGGAAGAGATGAGAAAGTTGTTTGAGAAGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005507-5-4,5-3,5-2,5-1-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(61.5=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAAACAGAACCACGCG
R:
GGTCGATGGTCAGGCCTTCAT
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]