GgaALTA0002778-1/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005507 | Q5ZIZ5_CHICK
Description
NA
Coordinates
chr4:2266780-2269413:-
Coord C1 exon
chr4:2269278-2269413
Coord A exon
NA
Coord C2 exon
chr4:2266780-2266922
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GTGTACCTTATTCCCCTCAGATG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTGGGGAAGATGCAGGGCAACAAGGGCTTCAACATGGAGAAACAGAACCACGCGCCGCGGAAGCAGCACCAGCACCAACACCAGCAGCACCCGCCGCCCTCCATCCCCGCCAACGGGCAGCAGGCCAACAGCCAGA
Seq A exon
NA
Seq C2 exon
ATGAAGGCCTGACCATCGACCTGAAGAATTTCCGGAAACCTGGGGAAAAAACCTTCACCCAAAGAAGCCGCCTCTTTGTGGGGAATCTGCCCCCAGATATTACAGAGGAAGAGATGAGAAAGTTGTTTGAGAAGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005507-5-4,5-3,5-2,5-1-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(61.5=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGCACCAGCACCAA
R:
TCTTCAGGTCGATGGTCAGGC
Band lengths:
104-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]