HsaALTA1033934-2/5 @ hg38
Alternative 3'ss
Gene
ENSG00000147140 | NONO
Description
non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:HGNC:7871]
Coordinates
chrX:71290629-71291821:+
Coord C1 exon
chrX:71290629-71290791
Coord A exon
chrX:71291779-71291784
Coord C2 exon
chrX:71291785-71291821
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAAGTGTGT
5' ss Score
2.99
3' ss Seq
GACTGTGTGTCTTCTCTCAGATG
3' ss Score
10.37
Exon sequences
Seq C1 exon
GGTGCAAAAATGCAGAGTAATAAAACTTTTAACTTGGAGAAGCAAAACCATACTCCAAGAAAGCATCATCAACATCACCACCAGCAGCAGCACCACCAGCAGCAACAGCAGCAGCCGCCACCACCGCCAATACCTGCAAATGGGCAACAGGCCAGCAGCCAAA
Seq A exon
ATGAAG
Seq C2 exon
GCTTGACTATTGACCTGAAGAATTTTAGAAAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147140-11-14,11-13,11-12,11-11,11-10-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF053086=Mito_fiss_reg=PU(63.0=98.1)
A:
NA
C2:
PF053086=Mito_fiss_reg=PD(35.8=60.4),PF0007617=RRM_1=PU(76.7=47.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGCAGCAACAGCAG
R:
AATTCTTCAGGTCAATAGTCAAGC
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains