GgaALTA0002831-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7353782-7354218:+
Coord C1 exon
chr15:7353782-7353814
Coord A exon
chr15:7354104-7354109
Coord C2 exon
chr15:7354110-7354218
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAGAGATCATGTCCTTTTAGTAG
3' ss Score
1.13
Exon sequences
Seq C1 exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
Seq A exon
TAGCAG
Seq C2 exon
AAGCTGCTGCAGAGACATCGTTGGAGGGGGGAAATATGGCCTTGGCCATCTTCATCCCAGTGCTGATCATCTCCTTGCTGCTGGGAGGAGCCTACATCTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-14-18,14-17,14-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAGCACGCTTTGGAAG
R:
CCCAGCAGCAAGGAGATGATC
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]