MmuALTA0016222-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112854634-112855778:-
Coord C1 exon
chr5:112855746-112855778
Coord A exon
chr5:112854743-112854748
Coord C2 exon
chr5:112854634-112854742
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCAGTGGCTTGTGTGCTCAGTAG
3' ss Score
3.08
Exon sequences
Seq C1 exon
TTAACCAAGACAGTTTTGAACATGCATTGGAAG
Seq A exon
TAGCAG
Seq C2 exon
AAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTACTGGGAGGAGCCTACATCTACGTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-14-18,14-17,14-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGACAGTTTTGAACATGCA
R:
GACCGGAATGAAGATGGCCAG
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: