GgaALTA0002901-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14341326-14341825:+
Coord C1 exon
chr8:14341326-14341632
Coord A exon
chr8:14341714-14341716
Coord C2 exon
chr8:14341717-14341825
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTTGCTCTGACTTCTGTTAGCAG
3' ss Score
3.35
Exon sequences
Seq C1 exon
GGTTACAGAACAGTCTGATGAAAATAAAATGTCAGCTAGCAACCTTGGCATAATATTTGGCCCAACTCTGATCAGGCCACGCCAAACAGATGCTACAGTTTCTTTATCCTCACTTGTGGATTATCCATATCAGGCCCGGGTAGTGGAGCTGCTTATAACATACTATGAGAAGATATTTGATGTTTCATTGCAACCGTTTCTGAGCACATCACAGACTGAAGAAAATGCCATTACAGTCAGAGTTGCTTTATCAGCAGAAGAGAGGGAACCACAGCAGCAGAGGAAGTCATTTGTTGCTGTGAAGGAA
Seq A exon
CAG
Seq C2 exon
GGTGTTCCAATAGCTTCAAGTGAAAACAGAGCTTCAGAAACAACTGCATTGCTTTTGGAATCGAACAATAGCAAGAATGCAAAAGAACAAGTAGATACATCTGTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-27-29,27-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.730
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.3=31.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACAGCAGCAGAGGAAG
R:
GCAATGCAGTTGTTTCTGAAGCT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]