GgaINT0037550 @ galGal3
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14341326-14341825:+
Coord C1 exon
chr8:14341326-14341632
Coord A exon
chr8:14341633-14341716
Coord C2 exon
chr8:14341717-14341825
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GCTCTGACTTCTGTTAGCAGGGT
3' ss Score
5.01
Exon sequences
Seq C1 exon
GGTTACAGAACAGTCTGATGAAAATAAAATGTCAGCTAGCAACCTTGGCATAATATTTGGCCCAACTCTGATCAGGCCACGCCAAACAGATGCTACAGTTTCTTTATCCTCACTTGTGGATTATCCATATCAGGCCCGGGTAGTGGAGCTGCTTATAACATACTATGAGAAGATATTTGATGTTTCATTGCAACCGTTTCTGAGCACATCACAGACTGAAGAAAATGCCATTACAGTCAGAGTTGCTTTATCAGCAGAAGAGAGGGAACCACAGCAGCAGAGGAAGTCATTTGTTGCTGTGAAGGAA
Seq A exon
GTGAGTCACTTCTCTTGTACTTTTCTGGGGAGGAATGTCTTTTCTCTTGTTCTCATTTACTTTTGCTCTGACTTCTGTTAGCAG
Seq C2 exon
GGTGTTCCAATAGCTTCAAGTGAAAACAGAGCTTCAGAAACAACTGCATTGCTTTTGGAATCGAACAATAGCAAGAATGCAAAAGAACAAGTAGATACATCTGTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.730
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.3=31.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCGTTTCTGAGCACAT
R:
TGCAGTTGTTTCTGAAGCTCTGT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]