DreINT0032335 @ danRer10
Intron Retention
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15523807-15524303:+
Coord C1 exon
chr2:15523807-15524110
Coord A exon
chr2:15524111-15524200
Coord C2 exon
chr2:15524201-15524303
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGTTTTTTCTCCTCATTCAGAGT
3' ss Score
9.45
Exon sequences
Seq C1 exon
AGTTTCAGAGCAAGCTGAGGAGAACAAGATGACCGCTAGTAACCTGGGCATCATCTTTGGCCCCACGCTCATTAAGCCCAGACATTTGGAGGCAGAAGTGTCGCTTTCCTCCCTGGTTGACTATCCTCACCAGGCCCGCATGGTGGAGCTGCTCATCAAACACCATCAGATGATCTTTGACGTGCCCCTCAGCCCCATGTCTCCAACCAGTCCAACTGTATCACAGGCTTCCTTTGGGTCCAGCATCCAGGACAAAGAGTCCAAACTCAGCCGTCACTCTAGATCCCTGATGGACATCAAAGAG
Seq A exon
GTAGGATGGCCTAGAGAATAGAAACCAGACTCGGTAGGATTAATTTAAGGAGATATTAAAGTTTTTGATTTGTTTTTTCTCCTCATTCAG
Seq C2 exon
AGTGCAAAACTCTACAAGAGACACTCGTCTGTGATCATCCCAGCTCAGCTCATGGAGGAAGGGAAGGAAATGAAGACTGGAGACCACAGAGTACAAACATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748:ENSDART00000141921:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.5=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTTGACGTGCCCCTCAG
R:
AGCTGAGCTGGGATGATCACA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]