MmuINT0018099 @ mm9
Intron Retention
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121714168-121715091:+
Coord C1 exon
chr3:121714168-121714498
Coord A exon
chr3:121714499-121714982
Coord C2 exon
chr3:121714983-121715091
Length
484 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TAATTCTCTCCCGTTAACAGGAT
3' ss Score
8.91
Exon sequences
Seq C1 exon
AGTGGTGGATCATGCAGAAGAGAACAAGATGAATTCTAAGAACTTGGGGGTGATATTTGGACCAACTCTCATTAGGCCAAGGCCTACAACGGCTCCTGTCACCATCTCGTCCCTTGCTGAATATTCCAATCAGGCACGATTAGTAGAGTTCCTTATTACTTACTCACAGAAGATCTTCGATGGGTCCCTCCAGCCTCAAGCTGTTGTTATATCTAACACAGGTGCTGTGGCACCTCAGGTTGATCAAGGCTATCTTCCAAAACCTCTGTTATCACCAGATGAGAGAGACACAGATCATTCTATGAAACCACTCTTTTTTTCTTCAAAGGAA
Seq A exon
GTAAGTTGTTTGTTGTTAATTTGTATGTGTATATGTGTATGTGCGTGCATGCACACAAATGACAAGACAGGCTTGTATTTGCCATGGCACTTGGGTAGAAGTCATTGGACAACTTTAGGGAGTTGATTTTCACCTCCACCATGTTGAGTCAGGGTCTGTCTTGTTTCTGCCACTGTGCAGTGTGGTCCAGGCTAGCTAGTTCAGAAACTTCTGAGAAATTCCAAGGTATATGCCTCACTGGATATACATAGGATTACAGATGCATGCTACTACATCTGTCTGTCTGTTTTACGTAGGCTCTGGGAATCATACTTGGGTTGTCAGTCTTTGTGAACAGCACCTTTAACTGTTGAGCAAAGTTTGGCTGGTACAGAGTTGGGTCAGAACTGTATGATGTTTATGTCAGTAATTTAATGGTCTTGCAACTCCTTCTTTTGAAATGTACTTTGTGTATACAAGTGTGATAATTCTCTCCCGTTAACAG
Seq C2 exon
GATATCCGTAGTTCAGATTGTGAGAGCAAAAGTTTTGAATTAACTACATCTTTTGAAGAATCAGAACGCAGACAAAATGCATTGGGGAAATGTGACGCTCCTCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-Arhgap29:NM_172525:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.351
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.3=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACGGCTCCTGTCACCAT
R:
GGAGCGTCACATTTCCCCAAT
Band lengths:
348-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: