BtaINT0020572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49470245-49470814:+
Coord C1 exon
chr3:49470245-49470575
Coord A exon
chr3:49470576-49470705
Coord C2 exon
chr3:49470706-49470814
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
AAACTTTCTTCTATCAACAGGAT
3' ss Score
9.6
Exon sequences
Seq C1 exon
AGTTGTAGATCATTCAGAAGAAAACAAAATGAACTCCAGAAACTTGGGTGTGATATTCGGACCAAGTCTCCTTAGGCCGAGGCCCACAACGGCTCCGATCACCATCTCCTCTCTTGCTGACTATTCAAATCAAGCACGGTTGGTAGAGTTCCTCATTACCTACTCACAGAAGATCTTCGATGGGTCCCTGCAGCCACAGGATTCGGCTGTAGGTAGTGCAGGTGGCATCGCACCTCAGGTTGACCCAGGCTATCTTCCAAAGTCTCTGTTATCACCAGAAGAAAGAGATCCAGAACGTTCTATGAAGTCATTGTTTTTCTCTTCAAAAGAA
Seq A exon
GTGAGTTTTGCTTATATGGAATTATGTTGGAACTTTGTAAAGTTTAATGTTATAAGTTGAAAATCTTTGAACTGTTTATTTTGAAGTGTGTTTTGCTTCTTCAAGTTTAAAAACTTTCTTCTATCAACAG
Seq C2 exon
GATATCCAAACTACGGATAGTGAATGCAAAAGTTTTGAATCCACTCCATCATTTGAGGAATCAGAGCGAAAGCAAAATGCATTAGAAAAATGTGATGCATATCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190:ENSBTAT00000005488:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.514
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.3=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTCGATGGGTCCCTGC
R:
TGCATTTTGCTTTCGCTCTGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]