HsaINT0011493 @ hg19
Intron Retention
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94643168-94643723:-
Coord C1 exon
chr1:94643408-94643723
Coord A exon
chr1:94643277-94643407
Coord C2 exon
chr1:94643168-94643276
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
AAATTATCTTGCATCAACAGGAT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGTAGTAGATCATGCAGAAGAAAACAAGATGAACTCCAAAAACTTGGGGGTGATATTTGGACCAAGTCTCATTAGGCCAAGGCCCACAACTGCTCCTATCACCATCTCCTCCCTTGCAGAGTATTCAAATCAAGCACGCTTGGTAGAGTTTCTCATTACTTACTCACAGAAGATCTTCGATGGGTCCCTACAACCACAAGATGTTATGTGTAGCATAGGTGTTGTTGATCAAGGCTGTTTTCCAAAGCCTCTGTTATCACCAGAAGAAAGAGACATTGAACGTTCCATGAAGTCACTATTTTTTTCTTCAAAGGAA
Seq A exon
GTGAGTTTGACCTTTATAGAATTATATTAGAACTTTGTAATATTTATGTTAATAAGTTAAAGATCTTTGAACTGTTTATTTTGAGGTTATGTTTTACTTCTTCCATTTTAAAAATTATCTTGCATCAACAG
Seq C2 exon
GATATCCATACTTCAGAGAGTGAAAGCAAAATTTTTGAACGAGCTACATCATTTGAGGAATCAGAACGCAAGCAAAATGCGTTAGGAAAATGTGATGCATGTCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-ARHGAP29:NM_004815:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.3=30.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGCTTGGTAGAGTTTCTCA
R:
TGCTTGCGTTCTGATTCCTCA
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)