RnoINT0020078 @ rn6
Intron Retention
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225607952-225608899:+
Coord C1 exon
chr2:225607952-225608282
Coord A exon
chr2:225608283-225608790
Coord C2 exon
chr2:225608791-225608899
Length
508 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
AAATTCTCTTCCATTAACAGGAT
3' ss Score
9.07
Exon sequences
Seq C1 exon
GGTGGTGGACCATGCAGAAGAGAACAAGATGAATTCTAAGAACTTGGGGGTGATATTTGGCCCAACGCTCATTAGGCCAAGGCCTACAACGGCTCCTGTCACCATCTCGTCCCTTGCTGAATATTCCAGTCAGGCACGAGTAGTAGAGTTCCTCATTACTTACGCACAGAAGATCTTCGATGGGTCCCTCCAGCCTCAAGCTGGTGTCATAGCTAACACAGGTGCTATTGCACCTCAAGTCGATCACGGGTGTCATCCAAAACCGCTCTTATCACCAGATGAGAGAGACTCGGATCATTCTTTGAAACAACTATTCTTCTCTTCAAAGGAA
Seq A exon
GTAAGTCGTCGTTAATTTGTTTGTGTATGTGTGTATGTGTGTGTGCATGCACACACATGACAAGACAGGCTTGTGCTTGCCATGGCACTTGGGTAGAAGTCATTGGACGACTTTGAAGGGTTGATTCTCACCTCCACCGTGTGAGTCAGGGTCTGTCTTGTTTCTGCTACTGTGCAGAGTGACCTAGGCTAGCTGGTCCAGAAGCTTCTGAGAAATTCCAAGGTATATGCCTCACTGGAGAAGCTCTAGGATTACAGATGCATGCTACTACAACTGCCTGTCTGCCTGTCTGTCTGTCTGTTTGGTGGTTTGTTTTATGGGCTCTGAGAATCATACTGGGGTTGCGAGGCTTTGTGAACAGCACCTTTACCTGCTGAGCAGAGCTGTGACCGGTACAGCATTGTGTTAGAGCTGTGTGGTGTTTGTGTCAGTAATTTAATGGTCTTGCACTCCTTCTTTTGAAATATGCTTTGTTTCTACAAGTGTGAAAATTCTCTTCCATTAACAG
Seq C2 exon
GATATCCGTACTATGGATTGTGAGAGCAAAACTTTTGAATTAACTACATCATTTGAAGAATCAGAACGCAAACAAAATGCATTGGGAAAATGTGATGCTCCCATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563:ENSRNOT00000017076:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(18.3=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACGGCTCCTGTCACCAT
R:
TGGGAGCATCACATTTTCCCA
Band lengths:
350-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]