GgaALTA0002924-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005716 | SBF2
Description
NA
Coordinates
chr5:9948204-9988692:+
Coord C1 exon
chr5:9948204-9948384
Coord A exon
chr5:9988604-9988606
Coord C2 exon
chr5:9988607-9988692
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ATTGTGCTTTTGTCTTTCAGCAG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GCGCCTCCAACATGGCTGAGGTGGTGCCGCTTCTTCTGCGGCGGGCGCGCGGCGGAGGATGCTGAGCCTCCCGGGATCCGCCGCCGCAGCAGGGGTGGTGAGGCCCGAGGCGCGCCCCTCGCAGCCATGGCCAGGCTGGCCGACTACTTCATCGTGGTGGGCTATGACCACGAGAAGACAG
Seq A exon
CAG
Seq C2 exon
GCCCAGCAGAAGGTTTGGGAAAAATAATCCAGAGGTTTCCTCAGAAGGACTGGGAAGACACTCCTTTCCCACAGGGAATAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=76.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTATGACCACGAGAAGA
R:
TGGGAAAGGAGTGTCTTCCCA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]