MmuALTA0015851-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117703772-117758436:-
Coord C1 exon
chr7:117758221-117758436
Coord A exon
chr7:117703858-117703860
Coord C2 exon
chr7:117703772-117703857
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GACTCATTTTGATCTCTCAGCAG
3' ss Score
5.01
Exon sequences
Seq C1 exon
GCAGGCGCAGTGAGCGCCTCGGTTGTCAAACATGGCTGAAGCGCCGCTGCTACCGCTACAGCCGCCGAAGGGAAAATGCTGAGCTCGCCCGGGCCGGGTGGGCGGCGGCGGCGGCGAGGGCGGCGACGGGAACCCGCTTCCCGGGCGCGGCGGCGGCGGTCATGGCCCGGCTGGCCGACTACTTCATTGTGGTAGGCTACGACCACGAGAAGCCAG
Seq A exon
CAG
Seq C2 exon
GGCCAGGAGAAGGTCTGGGGAAAATAATTCAGAGATTCCCACAGCAGGACTGGGATGACACGCCTTTCCCACAGGGAATTGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=76.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGCTACGACCACGAGAA
R:
GAAAGGCGTGTCATCCCAGTC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: