GgaALTA0003034-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14690600-14692907:-
Coord C1 exon
chr8:14692803-14692907
Coord A exon
NA
Coord C2 exon
chr8:14690600-14690700
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACA
5' ss Score
6.25
3' ss Seq
TTGTTTATTTTTTTTAGTAGTTT
3' ss Score
4.09
Exon sequences
Seq C1 exon
GAAATCCGATGGAACTGCACATTCATCCAATACCTCAGATGTGGAATCCACAGGTGCTGCCAGTATAAAAGAAACTACCTCATCTAGCATATCCAGACATTATAG
Seq A exon
NA
Seq C2 exon
TTTATCTGATTCAAGAAAAAGGACTCGTACAGGAAGAACTTGGCCTGCTGCAATACCGCATTTGAGAAGAAGAGGTCGCTTTCCACGAAAAGCACTCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-21-21,21-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF124463=DUF3682=FE(36.5=100)
A:
NA
C2:
PF124463=DUF3682=PD(13.5=10.9),PF140611=Mtf2_C=WD(100=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAGGTGCTGCCAGTATA
R:
GCAGGCCAAGTTCTTCCTGTA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]