GgaALTA0003171-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11171190-11178024:-
Coord C1 exon
chr5:11176851-11178024
Coord A exon
chr5:11171291-11171296
Coord C2 exon
chr5:11171190-11171290
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AATACTGTATTATCTTTGAGTTG
3' ss Score
-3.76
Exon sequences
Seq C1 exon
AGTCGCAATACATTTCATATCCACTGGCAGCTACTACACCTTTCCATCCACAAGGAAGCCTACCTATATATCCTCCAGTACTTACACCAGAATTGGCAAAAGTATTTGACAAAATTGCAAGCACCTCAGAATTTCTGAGAAATGGGAAGTCAAGCACAGACTTAGAGATGACTGCTATAAAGTCTGCAGTTTCCAGCCTACCAGCCTCAGAAAAATGCAGAGACATCAGTAAATTTGACTGGTTAGATTTGGATCCCCTCAGTAAACCAAAAGTGGATAGTGTGGAGACTTTGTATAAGGCAGAGGATCGTGGAGAGATGGCATCAGGTATGACAGCTGAAGATCCGTGGGATGCTGTGCTGTTAAAAGAGAAGCTGTTAGTAACTTGTCATCTGGAAAGAAAAATAAATGGGAAATCTTCTGGAGCAACCGTTACGAGGAGCCAGTCCTTGAACATGCGAACAACTCAGCTTGGGAAGTTACAAGGCCAAACATCACAG
Seq A exon
TTGCAG
Seq C2 exon
AAAGACAATGGGACCACTGGCACGCTGACAGAAAATGTGCTTCTCCAAGAAATGGAAGGGCAGAATCAAGAACTGTCAGCTTTTTCTCAAGCAGTTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-22-7,22-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCCTTGAACATGCGAA
R:
ACATTTTCTGTCAGCGTGCCA
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]