GgaALTA0003171-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11171190-11178024:-
Coord C1 exon
chr5:11176851-11178024
Coord A exon
NA
Coord C2 exon
chr5:11171190-11171290
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTATTATCTTTGAGTTGCAGAAA
3' ss Score
2.27
Exon sequences
Seq C1 exon
AGTCGCAATACATTTCATATCCACTGGCAGCTACTACACCTTTCCATCCACAAGGAAGCCTACCTATATATCCTCCAGTACTTACACCAGAATTGGCAAAAGTATTTGACAAAATTGCAAGCACCTCAGAATTTCTGAGAAATGGGAAGTCAAGCACAGACTTAGAGATGACTGCTATAAAGTCTGCAGTTTCCAGCCTACCAGCCTCAGAAAAATGCAGAGACATCAGTAAATTTGACTGGTTAGATTTGGATCCCCTCAGTAAACCAAAAGTGGATAGTGTGGAGACTTTGTATAAGGCAGAGGATCGTGGAGAGATGGCATCAGGTATGACAGCTGAAGATCCGTGGGATGCTGTGCTGTTAAAAGAGAAGCTGTTAGTAACTTGTCATCTGGAAAGAAAAATAAATGGGAAATCTTCTGGAGCAACCGTTACGAGGAGCCAGTCCTTGAACATGCGAACAACTCAGCTTGGGAAGTTACAAGGCCAAACATCACAG
Seq A exon
NA
Seq C2 exon
AAAGACAATGGGACCACTGGCACGCTGACAGAAAATGTGCTTCTCCAAGAAATGGAAGGGCAGAATCAAGAACTGTCAGCTTTTTCTCAAGCAGTTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-22-7,22-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCCTTGAACATGCGAA
R:
ACATTTTCTGTCAGCGTGCCA
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]