BtaALTA0022179-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35867460-35881269:+
Coord C1 exon
chr15:35867460-35868530
Coord A exon
chr15:35881166-35881169
Coord C2 exon
chr15:35881170-35881269
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
AAAAATTTTTTTCATTACAGAAA
3' ss Score
7.14
Exon sequences
Seq C1 exon
CAGGACAGTCTCCATATTTTTCATATCCTTTGACACCTGCCACACCCTTTCATCCACAAGGAAGCTTACCTATCTATCGCCCAGTCATCAGTCCTGACATGGCAAAGCTGTTTGACAAAATAGCTAGCACATCAGAATTTTTAAAAAATGGAAAAGCAAGGACTGATTTGGAGATAAATTCAAAAACTACAATCAGCAATCTGCAGGTATCTCCAAAGTCTGAAGATATCAGTAAATTTGATTGGTTAGACTTGGATCCTCTAAGTAAGCCTAAGGTGGACAATGTAGAGGTAGAGGACCATGAGGAAGAGAAAAATGTACCAGATTTGCTAGCAGACGATCCCTGGGATGCTGTTCTTCTTGAGGAGAGATCACCAGCAAGTTGTCACCTTGACAGAAAGGTGAATGGAAAATCTCTTTCTGGAGCAACAGTAACAAGAAGCCAGTCTTTAAATATTCGAACAACTCAGCCTACAAAAGTCCAGAGCCAAATATATCAG
Seq A exon
AAAG
Seq C2 exon
ACCCAAATGGGACCAGTACTTTGCCAACTGAAAGTTCTCTTCTACAAGAAATTGAAGTACAGAATGAGGAAGTAGCAGCTTTTTGTCAATCCATTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAACAGTAACAAGAAGCC
R:
GTTGGCAAAGTACTGGTCCCA
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development