RnoALTA0029216-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185233419-185252682:+
Coord C1 exon
chr1:185233419-185234547
Coord A exon
chr1:185252579-185252582
Coord C2 exon
chr1:185252583-185252682
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
AACCACTTTTTTGATTACAGAAA
3' ss Score
5.31
Exon sequences
Seq C1 exon
GACAGTCTCCATATTTTTCATATCCTTTGACACCTGCCACACCATTTCATCCACAAGGAAGTTTACCAGTCTATCGGCCACTAGTCAGTCCTGACATGGCAAAACTATTTGACAAAATAGCAAGTACCTCAGAATTTTTAAAAAATGGGAAAGCAAGGACTGATTTGGAGATAGCAAACTCGAAAGCTTCAGTCTGCAATCTACAAATATCTCCAAAGTCTGAAGACATCAATAAATTTGATTGGTTGGACTTGGATCCTCTGAGTAAGCCTAAGATAGACTGTGTGGAAGTGTTAGAACATGAAGAAGAGAAGAAGAATCCAGTTTTGCTAGCAGAGGATCCTTGGGATGCTGTTCTTCTTGAAGAGAGATCACCAACAAGTCGTCACCTAGAAAGGAAGGTGAATGGAAAATCCCTTTCTGGGGCGACTGTAACAAGAAGCCAGTCTTTAATCGTTCGGACAACTCAAGTTACAAAAGCCCAGAGCCAGGTATCTCAG
Seq A exon
AAAG
Seq C2 exon
ACCCAAATGGGACCAGTAGTTTGGCAACTGGAAGTTCTCTTCTACAAGAATTTGAAGTACAGAATGAGGAGGTGGCAGCTTTTTGTCAATCCATTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-8-6,8-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCAGAGCCAGGTATCTC
R:
CAAAAAGCTGCCACCTCCTCA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]