GgaALTA0003171-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12876863-12883612:-
Coord C1 exon
chr5:12882524-12883612
Coord A exon
NA
Coord C2 exon
chr5:12876863-12876963
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTATTATCTTTGAGTTGCAGAAA
3' ss Score
2.27
Exon sequences
Seq C1 exon
AGTCGCAATACATTTCATATCCACTGGCAGCTACTACACCTTTCCATCCACAAGGAAGCCTACCTATATATCCTCCAGTACTTACACCAGAATTGGCAAAAGTATTTGACAAAATTGCAAGCACCTCAGAATTTCTGAGAAATGGGAAGTCAAGCACAGACTTAGAGATGACTGCTATAAAGTCTGCAGTTTCCAGCCTACCAGCCTCAGAAAAATGCAGAGACATCAGTAAATTTGACTGGTTAGATTTGGATCCCCTCAGTAAACCAAAAGTGGATAGTGTGGAGACTTTGTATAAGGCAGAGGATCGTGGAGAGATGGCATCAGGTATGACAGCTGAAGATCCGTGGGATGCTGTGCTGTTAAAAGAGAAGCTGTTAGTAACTTGTCATCTGGAAAGAAAAATAAATGGGAAATCTTCTGGAGCAACCGTTACGAGGAGCCAGTCCTTGAACATGCGAACAACTCAGCTTGGGAAGTTACAAGGCCAAACATCACAG
Seq A exon
NA
Seq C2 exon
AAAGACAATGGGACCACTGGCACGCTGACAGAAAATGTGCTTCTCCAAGAAATGGAAGGGCAGAATCAAGAACTGTCAGCTTTTTCTCAAGCAGTTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCCTTGAACATGCGAA
R:
ACATTTTCTGTCAGCGTGCCA
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]