GgaALTA0003353-1/4 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr4:4423307-4423542:-
Coord C1 exon
chr4:4423417-4423542
Coord A exon
NA
Coord C2 exon
chr4:4423307-4423323
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCT
5' ss Score
4.28
3' ss Seq
AGTAGTCTTTCCTCTTACAGCGA
3' ss Score
8.3
Exon sequences
Seq C1 exon
TTACTCGAGCAGAGATTACCCCAGTTCCAGGGACACACGGGACTATGCACCACCTCCGCGTGACTATGCGTATCGTGATTATGGTCATTCCAGTTCACGTGATGAATACCCCTCCAGGGGCTATAG
Seq A exon
NA
Seq C2 exon
CGATCGTGATGGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457-14-17,14-16,14-15,14-14-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]