RnoALTA0033365-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159886609-159887133:-
Coord C1 exon
chrX:159887008-159887133
Coord A exon
chrX:159886620-159886625
Coord C2 exon
chrX:159886609-159886619
Length
6 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
AAAAGTTGCTTTTTCTGTAGTGA
3' ss Score
2.92
Exon sequences
Seq C1 exon
CTATTCAAGCAGAGACTATCCAAGTTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCACGAGATGACTATCCATCAAGAGGCTATAG
Seq A exon
TGATAG
Seq C2 exon
AGATGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-8-12,8-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]